[1] Huang, Wen-Chung, Li-Wen Fang, and Chian-Jiun Liou. "Corrigendum: Phloretin Attenuates Allergic Airway Inflammation and Oxidative Stress in Asthmatic Mice." Frontiers in Immunology 11 (2020): 582838.
[2] Varmaghani, Mehdi, Farshad Farzadfar, Farshad Sharifi, Arash Rashidian, Mostafa Moin, Maziar Moradi-Lakeh, et al. "Prevalence of asthma, COPD, and chronic bronchitis in Iran: a systematic review and meta-analysis." Iranian Journal of Allergy, Asthma and Immunology (2016): 93-104.
[3] Qu, Jingjing, Yuanyuan Li, Wen Zhong, Peisong Gao, and Chengping Hu. "Recent developments in the role of reactive oxygen species in allergic asthma." Journal of Thoracic Disease 9, no. 1 (2017): E32.
[4] Zhang, Ning, Changwen Deng, Xingxing Zhang, Jingxi Zhang, and Chong Bai. "Inhalation of hydrogen gas attenuates airway inflammation and oxidative stress in allergic asthmatic mice." Asthma Research and Practice 4 (2018): 1-9.
[5] Miao, Hongyu, Joseph A Hollenbaugh, Martin S Zand, Jeanne Holden-Wiltse, Tim R Mosmann, Alan S Perelson, et al. "Quantifying the early immune response and adaptive immune response kinetics in mice infected with influenza A virus." Journal of Virology 84, no. 13 (2010): 6687-6698.
[6] Robb, CT, KH Regan, DA Dorward, and AG Rossi. "Key mechanisms governing resolution of lung inflammation." Paper Presented at the Seminars in Immunopathology, 2016.
[7] Minucci, Sarah B, Rebecca L Heise, and Angela M Reynolds. "Review of mathematical modeling of the inflammatory response in lung infections and injuries." Frontiers in Applied Mathematics and Statistics 6 (2020): 36.
[8] Kolaczkowska, Elzbieta and Paul Kubes. "Neutrophil recruitment and function in health and inflammation." Nature Reviews Immunology 13, no. 3 (2013): 159-175.
[9] Bagnasco, Diego, Matteo Ferrando, Gilda Varricchi, Giovanni Passalacqua, and Giorgio Walter Canonica. "A critical evaluation of anti-IL-13 and anti-IL-4 strategies in severe asthma." International Archives of Allergy and Immunology 170, no. 2 (2016): 122-131.
[10] Lambrecht, BN, H Hammad, and JV Fahy. "The Cytokines of Asthma. Immunity [Internet]. 2019; 50 (4): 975–91."
[11] Herold, Susanne, Konstantin Mayer, and Juergen Lohmeyer. "Acute lung injury: how macrophages orchestrate resolution of inflammation and tissue repair." Frontiers in Immunology 2 (2011): 14194.
[12] Mosser, David M and Justin P Edwards. "Exploring the full spectrum of macrophage activation." Nature Reviews Immunology 8, no. 12 (2008): 958-969.
[13] ORDOÑEZ, CLAUDIA L, Ramin Khashayar, Hofer H Wong, RON Ferrando, REEN Wu, Dallas M Hyde, et al. "Mild and moderate asthma is associated with airway goblet cell hyperplasia and abnormalities in mucin gene expression." American Journal of Respiratory and Critical Care Medicine 163, no. 2 (2001): 517-523.
[14] Haak, Andrew J, Qi Tan, and Daniel J Tschumperlin. "Matrix biomechanics and dynamics in pulmonary fibrosis." Matrix Biology 73 (2018): 64-76.
[15] Esmaili Torshabi, Ahmad. "Investigation the motion data clustering of lung tumor on its position estimation at external surrogates’ radiotherapy." Journal of Modeling in Engineering 20.68 (2022): 73-83. (in Persian)
[16] Keshavarz, Taha. "A bi-objective optimization model for planning the treatment of cancer cells by volumetric modulated arc therapy." Journal of Modeling in Engineering 19.64 (2021): 95-107. (in Persian)
[17] Arabameri, Abazar and Arash Pourgholaminejad. "Modeling codelivery of CD73 inhibitor and dendritic cell-based vaccines in cancer immunotherapy." Computational Biology and Chemistry 95 (2021): 107585.
[18] Rahimnejad, Maedeh, Bahman Vahidi, Bahman Ebrahimi Hoseinzadeh, and Fatemeh Yazdian. "Molecular dynamics simulation of interaction of the anti-cancer drug paclitaxel with the cell membrane: investigation of changes in van der Waals energy and center of mass." Journal of Modeling in Engineering, 17, 57, (2019): 15-25. (in Persian)
[19] Asadzadeh, Samira, and Bahman Ravaei. "diagnosis of breast cancer at the molecular-cellular level with an artificial intelligence approach." Journal of Modeling in Engineering, 21, 72, (2023): 19-30. (in Persian)
[20] Brown, Bryan N, Ian M Price, Franklin R Toapanta, Dilhari R DeAlmeida, Clayton A Wiley, Ted M Ross, et al. "An agent-based model of inflammation and fibrosis following particulate exposure in the lung." Mathematical Biosciences 231, no. 2 (2011): 186-196.
[21] Pothen, J. J., M. E. Poynter, and J. H. Bates. "The inflammatory twitch as a general strategy for controlling the host response." [In eng]. J Immunol 190, no. 7 (Apr 1 2013): 3510-6. https://doi.org/10.4049/jimmunol.1202595.
[22] Pothen, Joshua J, Matthew E Poynter, and Jason HT Bates. "A computational model of unresolved allergic inflammation in chronic asthma." American Journal of Physiology-Lung Cellular and Molecular Physiology 308, no. 4 (2015): L384-L390.
[23] Aghasafari, Parya, Israr Bin M. Ibrahim, and Ramana Pidaparti. "Strain-induced inflammation in pulmonary alveolar tissue due to mechanical ventilation." Biomechanics and Modeling in Mechanobiology 16 (2017): 1103-1118.
[24] Ibrahim, Israr BM and Ramana Pidaparti. "Influence of pathogens and mechanical stimuli in inflammation." Bioengineering 6, no. 2 (2019): 55.
[25] Ceresa, Mario, Andy L Olivares, Jérôme Noailly, and Miguel A González Ballester. "Coupled immunological and biomechanical model of emphysema progression." Frontiers in Physiology 9 (2018): 341916.
[26] Amirazodi, M., A. Mehrabi, M. A. Rajizadeh, M. A. Bejeshk, K. Esmaeilpour, F. Daryanoosh, et al. "The effects of combined resveratrol and high intensity interval training on the hippocampus in aged male rats: An investigation into some signaling pathways related to mitochondria." [In eng]. Iran J Basic Med Sci 25, no. 2 (Feb 2022): 254-262. https://doi.org/10.22038/ijbms.2022.57780.12853.
[27] Bejeshk, M. A., A. H. Aminizadeh, M. A. Rajizadeh, M. Khaksari, M. Lashkarizadeh, N. Shahrokhi, et al. "The effect of combining basil seeds and gum Arabic on the healing process of experimental acetic acid-induced ulcerative colitis in rats." [In eng]. J Tradit Complement Med 12, no. 6 (Nov 2022): 599-607. https://doi.org/10.1016/j.jtcme.2022.08.001.
[28] Hong, Min-li, Ying Song, and Xiu-min Li. "Effects and mechanisms of actions of Chinese herbal medicines for asthma." Chinese Journal of Integrative Medicine 17 (2011): 483-491.
[29] Yatoo, M, A Gopalakrishnan, A Saxena, OR Parray, NA Tufani, S Chakraborty, et al. "Anti-Inflammatory Drugs and Herbs with Special Emphasis on Herbal Medicines for Countering Inflammatory Diseases and Disorders—A Review. Recent Pat Inflamm Allergy Drug Discov. 2018; 12 (1): 39–58."
[30] Oudijk, EJ D, JW J Lammers, and L Koenderman. "Systemic inflammation in chronic obstructive pulmonary disease." European Respiratory Journal 22, no. 46 suppl (2003): 5s-13s.
[31] Drake, Li Y, Maunick Lefin Koloko Ngassie, Benjamin B Roos, Jacob J Teske, and YS Prakash. "Asthmatic lung fibroblasts promote type 2 immune responses via endoplasmic reticulum stress response dependent thymic stromal lymphopoietin secretion." Frontiers in Physiology 14 (2023): 1064822.
[32] Rajizadeh, Mohammad Amin, Mohammad Abbas Bejeshk, Amir Hossein Doustimotlagh, Hamid Najafipour, Maryam Eftekhari, Merat Mahmoodi, et al. "The alleviating impacts of quercetin on inflammation and oxidant-antioxidant imbalance in rats with allergic asthma." Iranian Journal of Allergy, Asthma and Immunology (2023): 1-12.
[33] Rajizadeh, Mohammad Amin, Mohammad Hadi Nematollahi, Elham Jafari, Mohammad Abbas Bejeshk, Mehrnaz Mehrabani, Farzaneh Rostamzadeh, et al. "Formulation and evaluation of the anti-inflammatory, anti-oxidative, and anti-remodelling effects of the niosomal myrtenol on the lungs of asthmatic rats." Iranian Journal of Allergy, Asthma and Immunology (2023).
[34] Jin, F, DC Nieman, RA Shanely, AM Knab, MD Austin, and W Sha. "The variable plasma quercetin response to 12-week quercetin supplementation in humans." European Journal of Clinical Nutrition 64, no. 7 (2010): 692-697.
[35] Jihwaprani, Muhammad Candragupta, Wahyu Choirur Rizky, and Mazhar Mushtaq. "Pharmacokinetics of Quercetin." (2023).
[36] Graefe, E. U., J. Wittig, S. Mueller, A. K. Riethling, B. Uehleke, B. Drewelow, et al. "Pharmacokinetics and bioavailability of quercetin glycosides in humans." [In eng]. J Clin Pharmacol 41, no. 5 (May 2001): 492-9. https://doi.org/10.1177/00912700122010366.
[37] Flood-Page, Patrick, Andrew Menzies-Gow, Simon Phipps, Sun Ying, Arun Wangoo, Mara S Ludwig, et al. "Anti-IL-5 treatment reduces deposition of ECM proteins in the bronchial subepithelial basement membrane of mild atopic asthmatics." The Journal of Clinical Investigation 112, no. 7 (2003): 1029-1036.
[38] Huang, Yanmei and Chen Qiu. "Research advances in airway remodeling in asthma: a narrative review." Annals of Translational Medicine 10, no. 18 (2022).
[39] Moraes-Ferreira, Renilson, Maysa Alves Rodrigues Brandao-Rangel, Thiago Gonçalves Gibson-Alves, Anamei Silva-Reis, Victor Hugo Souza-Palmeira, Helida Cristina Aquino-Santos, et al. "Physical training reduces chronic airway inflammation and mediators of remodeling in asthma." Oxidative Medicine and Cellular Longevity 2022, no. 1 (2022): 5037553.
[40] Kips, JC. "Cytokines in asthma." European Respiratory Journal 18, no. 34 suppl (2001): 24s-33s.
[41] Rajizadeh, Mohammad Amin, Hamid Najafipour, and Mohammad Abbas Bejeshk. "An Updated Comprehensive Review of Plants and Herbal Compounds with Antiasthmatic Effect." Evidence‐Based Complementary and Alternative Medicine 2024, no. 1 (2024): 5373117.
[42] Coomes, SM, Y Kannan, VS Pelly, LJ Entwistle, R Guidi, J Perez-Lloret, et al. "CD4+ Th2 cells are directly regulated by IL-10 during allergic airway inflammation." Mucosal Immunology 10, no. 1 (2017): 150-161.
[43] Chung, F. "Anti-inflammatory cytokines in asthma and allergy: interleukin-10, interleukin-12, interferon-gamma." [In eng]. Mediators Inflamm 10, no. 2 (Apr 2001): 51-9. https://doi.org/10.1080/09629350120054518.
[44] Marino, Simeone, Ian B Hogue, Christian J Ray, and Denise E Kirschner. "A methodology for performing global uncertainty and sensitivity analysis in systems biology." Journal of Theoretical Biology 254, no. 1 (2008): 178-196.